J3_7QG8_024

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7QG8|1|N|A|2518, 7QG8|1|N|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QG8_024 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0754

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7QG8|1|N|C|2517
7QG8|1|N|A|2518
7QG8|1|N|U|2519
7QG8|1|N|C|2520
*
7QG8|1|N|G|2545
7QG8|1|N|U|2546
7QG8|1|N|A|2547
*
7QG8|1|N|U|2561
7QG8|1|N|U|2562
7QG8|1|N|U|2563
7QG8|1|N|A|2564
7QG8|1|N|A|2565
7QG8|1|N|A|2566
7QG8|1|N|G|2567

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain X

50S ribosomal protein L14