3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
7QG8|1|N|A|2388, 7QG8|1|N|U|2390, 7QG8|1|N|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7QG8_036 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0665
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7QG8|1|N|G|2282
7QG8|1|N|C|2283
7QG8|1|N|A|2284
*
7QG8|1|N|U|2384
7QG8|1|N|C|2385
7QG8|1|N|A|2386
7QG8|1|N|U|2387
7QG8|1|N|A|2388
7QG8|1|N|G|2389
7QG8|1|N|U|2390
7QG8|1|N|G|2391
7QG8|1|N|A|2392
7QG8|1|N|U|2393
7QG8|1|N|C|2394
7QG8|1|N|C|2395
*
7QG8|1|N|G|2421
7QG8|1|N|C|2422
7QG8|1|N|U|2423
7QG8|1|N|C|2424
7QG8|1|N|A|2425
7QG8|1|N|A|2426
7QG8|1|N|C|2427

Current chains

Chain N
23S rRNA

Nearby chains

Chain Y
50S ribosomal protein L15
Chain j
50S ribosomal protein L27
Chain o
50S ribosomal protein L33
Chain q
50S ribosomal protein L35

Coloring options:


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