J3_7QGH_006

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGH_006 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.0717

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7QGH|1|0|U|943
7QGH|1|0|G|944
7QGH|1|0|G|945
7QGH|1|0|A|946
*
7QGH|1|0|U|1235
7QGH|1|0|A|1236
7QGH|1|0|C|1237
*
7QGH|1|0|G|1337
7QGH|1|0|G|1338
7QGH|1|0|A|1339
7QGH|1|0|A|1340

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 8

30S ribosomal protein S9

Chain D

30S ribosomal protein S13

Chain M

Transfer RNA; tRNA