J3_7QGN_005

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGN_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0686

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7QGN|1|0|C|936
7QGN|1|0|A|937
7QGN|1|0|A|938
7QGN|1|0|G|939
*
7QGN|1|0|C|1344
7QGN|1|0|U|1345
7QGN|1|0|A|1346
7QGN|1|0|G|1347
7QGN|1|0|U|1348
7QGN|1|0|A|1349
7QGN|1|0|A|1350
*
7QGN|1|0|U|1372
7QGN|1|0|G|1373
7QGN|1|0|A|1374
7QGN|1|0|A|1375
7QGN|1|0|U|1376
7QGN|1|0|A|1377
7QGN|1|0|C|1378
7QGN|1|0|G|1379

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 6

Ribosomal protein S7

Chain 8

30S ribosomal protein S9