J3_7QGN_033
3D structure
- PDB id
- 7QGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the SmrB-bound E. coli disome - stalled 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.37 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7QGN|1|N|U|34, 7QGN|1|N|U|448, 7QGN|1|N|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QGN_033 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0952
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7QGN|1|N|C|32
7QGN|1|N|C|33
7QGN|1|N|U|34
7QGN|1|N|G|35
*
7QGN|1|N|C|445
7QGN|1|N|G|446
7QGN|1|N|A|447
7QGN|1|N|U|448
7QGN|1|N|A|449
7QGN|1|N|G|450
7QGN|1|N|U|451
7QGN|1|N|G|452
7QGN|1|N|A|453
7QGN|1|N|A|454
7QGN|1|N|C|455
7QGN|1|N|C|456
7QGN|1|N|A|457
7QGN|1|N|G|458
7QGN|1|N|U|459
7QGN|1|N|A|460
7QGN|1|N|C|461
*
7QGN|1|N|G|468
7QGN|1|N|G|469
7QGN|1|N|A|470
7QGN|1|N|A|471
7QGN|1|N|A|472
7QGN|1|N|G|473
Current chains
- Chain N
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L4
- Chain d
- 50S ribosomal protein L20
- Chain g
- 50S ribosomal protein L23
- Chain p
- 50S ribosomal protein L34
- Chain s
- VemP nascent chain
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