J3_7QGR_019

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

7QGR|1|N|A|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGR_019 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.1768

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7QGR|1|N|C|1298
7QGR|1|N|G|1299
7QGR|1|N|G|1300
7QGR|1|N|A|1301
7QGR|1|N|A|1302
7QGR|1|N|G|1303
*
7QGR|1|N|C|1625
7QGR|1|N|A|1626
7QGR|1|N|G|1627
*
7QGR|1|N|C|1639
7QGR|1|N|A|1640
7QGR|1|N|A|1641
7QGR|1|N|G|1642

Current chains

Chain N

23S rRNA

Nearby chains