J3_7QGU_041

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

AC*GAUAUGC*GAUUU

Length

14 nucleotides

Bulged bases

7QGU|1|A|U|72, 7QGU|1|A|U|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGU_041 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.1578

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.1

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

7QGU|1|A|A|56
7QGU|1|A|C|57
*
7QGU|1|A|G|70
7QGU|1|A|A|71
7QGU|1|A|U|72
7QGU|1|A|A|73
7QGU|1|A|U|74
7QGU|1|A|G|75
7QGU|1|A|C|76
*
7QGU|1|A|G|109
7QGU|1|A|A|110
7QGU|1|A|U|111
7QGU|1|A|U|112
7QGU|1|A|U|113

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain Z

50S ribosomal protein L29

Chain d

50S ribosomal protein L34