J3_7QI4_011

3D structure

PDB id

7QI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome at 2.2 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QI4_011 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0841

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7QI4|1|AA|A|1198
7QI4|1|AA|G|1199
7QI4|1|AA|G|1200
7QI4|1|AA|A|1201
*
7QI4|1|AA|U|1364
7QI4|1|AA|A|1365
7QI4|1|AA|C|1366
*
7QI4|1|AA|G|1421
7QI4|1|AA|G|1422
7QI4|1|AA|A|1423
7QI4|1|AA|U|1424

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial

Chain Ax

Transfer RNA; tRNA