J3_7QIW_004

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGG*UGUGGAAGGCA*UCCGGA

Length

20 nucleotides

Bulged bases

7QIW|1|2|G|576, 7QIW|1|2|C|616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|U|506
7QIW|1|2|G|507
7QIW|1|2|G|508
*
7QIW|1|2|U|569
7QIW|1|2|G|570
7QIW|1|2|U|571
7QIW|1|2|G|572
7QIW|1|2|G|573
7QIW|1|2|A|574
7QIW|1|2|A|575
7QIW|1|2|G|576
7QIW|1|2|G|577
7QIW|1|2|C|578
7QIW|1|2|A|579
*
7QIW|1|2|U|615
7QIW|1|2|C|616
7QIW|1|2|C|617
7QIW|1|2|G|618
7QIW|1|2|G|619
7QIW|1|2|A|620

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain H

Ribosomal_L6e_N domain-containing protein

Chain I

Thaliana 60S ribosomal protein L7

Chain g

60S ribosomal protein eL32

Chain h

60S ribosomal protein eL33