J3_7QIW_012

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

C(PSU)UUG*CUUA(PSU)U*AAGACAUUG

Length

20 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|C|2434
7QIW|1|2|PSU|2435
7QIW|1|2|U|2436
7QIW|1|2|U|2437
7QIW|1|2|G|2438
*
7QIW|1|2|C|2517
7QIW|1|2|U|2518
7QIW|1|2|U|2519
7QIW|1|2|A|2520
7QIW|1|2|PSU|2521
7QIW|1|2|U|2522
*
7QIW|1|2|A|2594
7QIW|1|2|A|2595
7QIW|1|2|G|2596
7QIW|1|2|A|2597
7QIW|1|2|C|2598
7QIW|1|2|A|2599
7QIW|1|2|U|2600
7QIW|1|2|U|2601
7QIW|1|2|G|2602

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain J

Ribosomal_L7Ae domain-containing protein

Chain P

Ribosomal protein L15

Chain k

60S ribosomal protein L36