J3_7QIW_016

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UCAUAC*GGC*GUG

Length

12 nucleotides

Bulged bases

7QIW|1|5|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|5|U|9
7QIW|1|5|C|10
7QIW|1|5|A|11
7QIW|1|5|U|12
7QIW|1|5|A|13
7QIW|1|5|C|14
*
7QIW|1|5|G|65
7QIW|1|5|G|66
7QIW|1|5|C|67
*
7QIW|1|5|G|108
7QIW|1|5|U|109
7QIW|1|5|G|110

Current chains

Chain 5

5S rRNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain G

Ribosomal_L18_c domain-containing protein

Chain L

60S ribosomal protein L10

Chain M

60S ribosomal protein uL5

Chain V

60S ribosomal protein eL21