J3_7QIW_021

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGGCGAUG*UGG*CUGUGG

Length

17 nucleotides

Bulged bases

7QIW|1|2|G|435, 7QIW|1|2|G|437, 7QIW|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|C|433
7QIW|1|2|G|434
7QIW|1|2|G|435
7QIW|1|2|C|436
7QIW|1|2|G|437
7QIW|1|2|A|438
7QIW|1|2|U|439
7QIW|1|2|G|440
*
7QIW|1|2|U|496
7QIW|1|2|G|497
7QIW|1|2|G|498
*
7QIW|1|2|C|628
7QIW|1|2|U|629
7QIW|1|2|G|630
7QIW|1|2|U|631
7QIW|1|2|G|632
7QIW|1|2|G|633

Current chains

Chain 2

25S rRNA

Nearby chains

Chain g

60S ribosomal protein eL32

Chain h

60S ribosomal protein eL33

Chain r

Ribosomal_L28e domain-containing protein