J3_7QIW_028

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCCG*CACGUGUCGUUG*CUUGAAGUACAAUUUCC

Length

33 nucleotides

Bulged bases

7QIW|1|2|U|3213, 7QIW|1|2|A|3260, 7QIW|1|2|U|3262, 7QIW|1|2|C|3264, 7QIW|1|2|U|3267, 7QIW|1|2|U|3268, 7QIW|1|2|U|3269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|G|3172
7QIW|1|2|C|3173
7QIW|1|2|C|3174
7QIW|1|2|G|3175
*
7QIW|1|2|C|3207
7QIW|1|2|A|3208
7QIW|1|2|C|3209
7QIW|1|2|G|3210
7QIW|1|2|U|3211
7QIW|1|2|G|3212
7QIW|1|2|U|3213
7QIW|1|2|C|3214
7QIW|1|2|G|3215
7QIW|1|2|U|3216
7QIW|1|2|U|3217
7QIW|1|2|G|3218
*
7QIW|1|2|C|3255
7QIW|1|2|U|3256
7QIW|1|2|U|3257
7QIW|1|2|G|3258
7QIW|1|2|A|3259
7QIW|1|2|A|3260
7QIW|1|2|G|3261
7QIW|1|2|U|3262
7QIW|1|2|A|3263
7QIW|1|2|C|3264
7QIW|1|2|A|3265
7QIW|1|2|A|3266
7QIW|1|2|U|3267
7QIW|1|2|U|3268
7QIW|1|2|U|3269
7QIW|1|2|C|3270
7QIW|1|2|C|3271

Current chains

Chain 2

25S rRNA

Nearby chains

Chain H

Ribosomal_L6e_N domain-containing protein

Chain O

Ribosomal_L14e domain-containing protein

Chain Q

60S ribosomal protein uL13

Chain h

60S ribosomal protein eL33