J3_7QIZ_003

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAUG*UGG*CUGUG

Length

13 nucleotides

Bulged bases

7QIZ|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|C|436
7QIZ|1|2|G|437
7QIZ|1|2|A|438
7QIZ|1|2|U|439
7QIZ|1|2|G|440
*
7QIZ|1|2|U|496
7QIZ|1|2|G|497
7QIZ|1|2|G|498
*
7QIZ|1|2|C|628
7QIZ|1|2|U|629
7QIZ|1|2|G|630
7QIZ|1|2|U|631
7QIZ|1|2|G|632

Current chains

Chain 2

25S rRNA

Nearby chains

Chain g

60S ribosomal protein eL32

Chain h

60S ribosomal protein eL33

Chain r

Ribosomal_L28e domain-containing protein