J3_7QIZ_004

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGG*UGUGGAAGGCA*UCCGGA

Length

20 nucleotides

Bulged bases

7QIZ|1|2|G|576, 7QIZ|1|2|C|616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|U|506
7QIZ|1|2|G|507
7QIZ|1|2|G|508
*
7QIZ|1|2|U|569
7QIZ|1|2|G|570
7QIZ|1|2|U|571
7QIZ|1|2|G|572
7QIZ|1|2|G|573
7QIZ|1|2|A|574
7QIZ|1|2|A|575
7QIZ|1|2|G|576
7QIZ|1|2|G|577
7QIZ|1|2|C|578
7QIZ|1|2|A|579
*
7QIZ|1|2|U|615
7QIZ|1|2|C|616
7QIZ|1|2|C|617
7QIZ|1|2|G|618
7QIZ|1|2|G|619
7QIZ|1|2|A|620

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain H

Ribosomal_L6e_N domain-containing protein

Chain I

Thaliana 60S ribosomal protein L7

Chain g

60S ribosomal protein eL32

Chain h

60S ribosomal protein eL33