J3_7QIZ_009

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(OMU)CGAUC*GGAAU*AAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|G|1536
7QIZ|1|2|OMU|1537
7QIZ|1|2|C|1538
7QIZ|1|2|G|1539
7QIZ|1|2|A|1540
7QIZ|1|2|U|1541
7QIZ|1|2|C|1542
*
7QIZ|1|2|G|1596
7QIZ|1|2|G|1597
7QIZ|1|2|A|1598
7QIZ|1|2|A|1599
7QIZ|1|2|U|1600
*
7QIZ|1|2|A|1617
7QIZ|1|2|A|1618
7QIZ|1|2|C|1619

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain Z

Ribosomal_L23eN domain-containing protein

Chain i

60S ribosomal protein eL34

Chain m

60S ribosomal protein L38

Chain n

60S ribosomal protein eL39