J3_7QIZ_012

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

C(PSU)UUG*CUUA(PSU)U*AAGACAUUG

Length

20 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|C|2434
7QIZ|1|2|PSU|2435
7QIZ|1|2|U|2436
7QIZ|1|2|U|2437
7QIZ|1|2|G|2438
*
7QIZ|1|2|C|2517
7QIZ|1|2|U|2518
7QIZ|1|2|U|2519
7QIZ|1|2|A|2520
7QIZ|1|2|PSU|2521
7QIZ|1|2|U|2522
*
7QIZ|1|2|A|2594
7QIZ|1|2|A|2595
7QIZ|1|2|G|2596
7QIZ|1|2|A|2597
7QIZ|1|2|C|2598
7QIZ|1|2|A|2599
7QIZ|1|2|U|2600
7QIZ|1|2|U|2601
7QIZ|1|2|G|2602

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain J

Ribosomal_L7Ae domain-containing protein

Chain P

Ribosomal protein L15

Chain k

60S ribosomal protein L36