J3_7QIZ_015

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCU*AAACG*CUCCG

Length

13 nucleotides

Bulged bases

7QIZ|1|2|C|3384

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|C|3291
7QIZ|1|2|C|3292
7QIZ|1|2|U|3293
*
7QIZ|1|2|A|3307
7QIZ|1|2|A|3308
7QIZ|1|2|A|3311
7QIZ|1|2|C|3312
7QIZ|1|2|G|3313
*
7QIZ|1|2|C|3381
7QIZ|1|2|U|3382
7QIZ|1|2|C|3383
7QIZ|1|2|C|3384
7QIZ|1|2|G|3385

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic

Chain f

60S ribosomal protein eL31