J3_7QIZ_017

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AG*CGC(A2M)AAUUA*U(A2M)GU

Length

15 nucleotides

Bulged bases

7QIZ|1|S2|C|439, 7QIZ|1|S2|U|444

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|S2|A|41
7QIZ|1|S2|G|42
*
7QIZ|1|S2|C|437
7QIZ|1|S2|G|438
7QIZ|1|S2|C|439
7QIZ|1|S2|A2M|440
7QIZ|1|S2|A|441
7QIZ|1|S2|A|442
7QIZ|1|S2|U|443
7QIZ|1|S2|U|444
7QIZ|1|S2|A|445
*
7QIZ|1|S2|U|467
7QIZ|1|S2|A2M|468
7QIZ|1|S2|G|469
7QIZ|1|S2|U|470

Current chains

Chain S2

18S

Nearby chains

Chain CA

40S body ribosomal protein uS12

Chain GA

40S body ribosomal protein uS4

Chain KA

40S ribosomal protein S24