J3_7QIZ_019
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AGAG*CAA*UCUGUAU
- Length
- 14 nucleotides
- Bulged bases
- 7QIZ|1|S2|C|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_019 not in the Motif Atlas
- Homologous match to J3_8C3A_035
- Geometric discrepancy: 0.3627
- The information below is about J3_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_00811.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|S2|A|764
7QIZ|1|S2|G|765
7QIZ|1|S2|A|766
7QIZ|1|S2|G|767
*
7QIZ|1|S2|C|777
7QIZ|1|S2|A|778
7QIZ|1|S2|A|779
*
7QIZ|1|S2|U|788
7QIZ|1|S2|C|789
7QIZ|1|S2|U|790
7QIZ|1|S2|G|791
7QIZ|1|S2|U|792
7QIZ|1|S2|A|793
7QIZ|1|S2|U|794
Current chains
- Chain S2
- 18S
Nearby chains
- Chain GA
- 40S body ribosomal protein uS4
- Chain KA
- 40S ribosomal protein S24
- Chain w
- 40S ribosomal protein S4
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