J3_7QIZ_025
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- G(PSU)(OMC)CAGAC*GGGUGG*C(OMU)UAGAUGUU
- Length
- 24 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|1220, 7QIZ|1|S2|G|1450, 7QIZ|1|S2|U|1452
- QA status
- Modified nucleotides: PSU, OMC, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QIZ|1|S2|G|1216
7QIZ|1|S2|PSU|1217
7QIZ|1|S2|OMC|1218
7QIZ|1|S2|C|1219
7QIZ|1|S2|A|1220
7QIZ|1|S2|G|1221
7QIZ|1|S2|A|1222
7QIZ|1|S2|C|1223
*
7QIZ|1|S2|G|1266
7QIZ|1|S2|G|1267
7QIZ|1|S2|G|1268
7QIZ|1|S2|U|1269
7QIZ|1|S2|G|1270
7QIZ|1|S2|G|1271
*
7QIZ|1|S2|C|1446
7QIZ|1|S2|OMU|1447
7QIZ|1|S2|U|1448
7QIZ|1|S2|A|1449
7QIZ|1|S2|G|1450
7QIZ|1|S2|A|1451
7QIZ|1|S2|U|1452
7QIZ|1|S2|G|1453
7QIZ|1|S2|U|1454
7QIZ|1|S2|U|1455
Current chains
- Chain S2
- 18S
Nearby chains
- Chain PA
- S10_plectin domain-containing protein
- Chain QA
- 40S ribosomal protein uS19
- Chain XA
- 40S ribosomal protein uS14
Coloring options: