J3_7QIZ_035

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UC*GGACG*CACGGA

Length

13 nucleotides

Bulged bases

7QIZ|1|2|C|1077, 7QIZ|1|2|C|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|U|998
7QIZ|1|2|C|999
*
7QIZ|1|2|G|1074
7QIZ|1|2|G|1075
7QIZ|1|2|A|1076
7QIZ|1|2|C|1077
7QIZ|1|2|G|1078
*
7QIZ|1|2|C|1104
7QIZ|1|2|A|1105
7QIZ|1|2|C|1106
7QIZ|1|2|G|1107
7QIZ|1|2|G|1108
7QIZ|1|2|A|1109

Current chains

Chain 2

25S rRNA

Nearby chains

Chain I

Thaliana 60S ribosomal protein L7

Chain V

60S ribosomal protein eL21

Chain d

60S ribosomal protein L29