J3_7QIZ_041

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCCG*CACGUGUCGUUG*CUUGAAGUACAAUUUCC

Length

33 nucleotides

Bulged bases

7QIZ|1|2|U|3213, 7QIZ|1|2|A|3260, 7QIZ|1|2|U|3262, 7QIZ|1|2|C|3264, 7QIZ|1|2|U|3267, 7QIZ|1|2|U|3268, 7QIZ|1|2|U|3269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|G|3172
7QIZ|1|2|C|3173
7QIZ|1|2|C|3174
7QIZ|1|2|G|3175
*
7QIZ|1|2|C|3207
7QIZ|1|2|A|3208
7QIZ|1|2|C|3209
7QIZ|1|2|G|3210
7QIZ|1|2|U|3211
7QIZ|1|2|G|3212
7QIZ|1|2|U|3213
7QIZ|1|2|C|3214
7QIZ|1|2|G|3215
7QIZ|1|2|U|3216
7QIZ|1|2|U|3217
7QIZ|1|2|G|3218
*
7QIZ|1|2|C|3255
7QIZ|1|2|U|3256
7QIZ|1|2|U|3257
7QIZ|1|2|G|3258
7QIZ|1|2|A|3259
7QIZ|1|2|A|3260
7QIZ|1|2|G|3261
7QIZ|1|2|U|3262
7QIZ|1|2|A|3263
7QIZ|1|2|C|3264
7QIZ|1|2|A|3265
7QIZ|1|2|A|3266
7QIZ|1|2|U|3267
7QIZ|1|2|U|3268
7QIZ|1|2|U|3269
7QIZ|1|2|C|3270
7QIZ|1|2|C|3271

Current chains

Chain 2

25S rRNA

Nearby chains

Chain H

Ribosomal_L6e_N domain-containing protein

Chain O

Ribosomal_L14e domain-containing protein

Chain Q

Pectinesterase

Chain h

60S ribosomal protein eL33