J3_7QIZ_048
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGGAAACU(PSU)AC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 7QIZ|1|S2|G|1202, 7QIZ|1|S2|G|1204, 7QIZ|1|S2|A|1206
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_048 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1759
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7QIZ|1|S2|C|1183
7QIZ|1|S2|PSU|1184
7QIZ|1|S2|U|1185
7QIZ|1|S2|A|1186
7QIZ|1|S2|A|1187
7QIZ|1|S2|U|1188
7QIZ|1|S2|U|1189
7QIZ|1|S2|PSU|1190
*
7QIZ|1|S2|G|1201
7QIZ|1|S2|G|1202
7QIZ|1|S2|G|1203
7QIZ|1|S2|G|1204
7QIZ|1|S2|A|1205
7QIZ|1|S2|A|1206
7QIZ|1|S2|A|1207
7QIZ|1|S2|C|1208
7QIZ|1|S2|U|1209
7QIZ|1|S2|PSU|1210
7QIZ|1|S2|A|1211
7QIZ|1|S2|C|1212
*
7QIZ|1|S2|G|1459
7QIZ|1|S2|G|1460
7QIZ|1|S2|C|1461
7QIZ|1|S2|C|1462
7QIZ|1|S2|G|1463
Current chains
- Chain S2
- 18S
Nearby chains
- Chain QA
- 40S ribosomal protein uS19
- Chain TA
- 40S ribosomal protein uS13
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
Coloring options: