J3_7QP7_014

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

7QP7|1|A|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QP7_014 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0606

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7QP7|1|A|A|40
7QP7|1|A|G|41
7QP7|1|A|A|42
7QP7|1|A|U|43
7QP7|1|A|U|44
7QP7|1|A|A|45
7QP7|1|A|A|46
7QP7|1|A|G|47
*
7QP7|1|A|C|479
7QP7|1|A|G|480
7QP7|1|A|C|481
7QP7|1|A|G|482
7QP7|1|A|C|483
7QP7|1|A|A2M|484
7QP7|1|A|A|485
7QP7|1|A|A|486
7QP7|1|A|U|487
*
7QP7|1|A|A|512
7QP7|1|A|G|513
7QP7|1|A|U|514

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain E

40S ribosomal protein S23