J3_7QV1_033

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

7QV1|1|a|C|50, 7QV1|1|a|A|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QV1_033 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1241

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7QV1|1|a|G|48
7QV1|1|a|C|49
7QV1|1|a|C|50
7QV1|1|a|U|51
7QV1|1|a|A|52
7QV1|1|a|A|53
7QV1|1|a|U|54
*
7QV1|1|a|A|367
7QV1|1|a|G|368
7QV1|1|a|G|369
7QV1|1|a|G|370
7QV1|1|a|A|371
7QV1|1|a|A|372
7QV1|1|a|U|373
7QV1|1|a|C|374
7QV1|1|a|U|375
*
7QV1|1|a|A|401
7QV1|1|a|G|402
7QV1|1|a|C|403

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16