J3_7QVP_004

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

7QVP|1|L5|G|959, 7QVP|1|L5|C|962, 7QVP|1|L5|C|967, 7QVP|1|L5|C|968, 7QVP|1|L5|C|969, 7QVP|1|L5|U|971, 7QVP|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|C|712
7QVP|1|L5|C|713
*
7QVP|1|L5|G|955
7QVP|1|L5|A|956
7QVP|1|L5|G|957
7QVP|1|L5|G|958
7QVP|1|L5|G|959
7QVP|1|L5|A|960
7QVP|1|L5|G|961
7QVP|1|L5|C|962
7QVP|1|L5|G|963
7QVP|1|L5|A|964
7QVP|1|L5|G|965
7QVP|1|L5|A|966
7QVP|1|L5|C|967
7QVP|1|L5|C|968
7QVP|1|L5|C|969
7QVP|1|L5|G|970
7QVP|1|L5|U|971
7QVP|1|L5|C|972
7QVP|1|L5|G|973
7QVP|1|L5|C|974
7QVP|1|L5|C|975
7QVP|1|L5|G|976
*
7QVP|1|L5|C|1278
7QVP|1|L5|A|1279
7QVP|1|L5|C|1280
7QVP|1|L5|G|1281
7QVP|1|L5|G|1282
7QVP|1|L5|G|1283
7QVP|1|L5|G|1284

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32