J3_7QVP_031
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACGCAGCUAGCU*AUU*ACACU
- Length
- 20 nucleotides
- Bulged bases
- 7QVP|1|L8|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_031 not in the Motif Atlas
- Geometric match to J3_4WF9_001
- Geometric discrepancy: 0.2697
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7QVP|1|L8|A|44
7QVP|1|L8|C|45
7QVP|1|L8|G|46
7QVP|1|L8|C|47
7QVP|1|L8|A|48
7QVP|1|L8|G|49
7QVP|1|L8|C|50
7QVP|1|L8|U|51
7QVP|1|L8|A|52
7QVP|1|L8|G|53
7QVP|1|L8|C|54
7QVP|1|L8|U|55
*
7QVP|1|L8|A|62
7QVP|1|L8|U|63
7QVP|1|L8|U|64
*
7QVP|1|L8|A|95
7QVP|1|L8|C|96
7QVP|1|L8|A|97
7QVP|1|L8|C|98
7QVP|1|L8|U|99
Current chains
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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