J3_7QVP_035
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUCUUGGGAGCGGGCGUCCCCGCCCCUCUCGGCGCCCGAAGCGUU*AUGGAAUAGG*CAUGAU
- Length
- 61 nucleotides
- Bulged bases
- 7QVP|1|S2|C|687, 7QVP|1|S2|U|732, 7QVP|1|S2|U|871, 7QVP|1|S2|G|873, 7QVP|1|S2|A|913
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QVP|1|S2|A|685
7QVP|1|S2|U|686
7QVP|1|S2|C|687
7QVP|1|S2|U|688
7QVP|1|S2|U|689
7QVP|1|S2|G|690
7QVP|1|S2|G|691
7QVP|1|S2|G|692
7QVP|1|S2|A|693
7QVP|1|S2|G|694
7QVP|1|S2|C|695
7QVP|1|S2|G|696
7QVP|1|S2|G|697
7QVP|1|S2|G|698
7QVP|1|S2|C|730
7QVP|1|S2|G|731
7QVP|1|S2|U|732
7QVP|1|S2|C|733
7QVP|1|S2|C|734
7QVP|1|S2|C|735
7QVP|1|S2|C|736
7QVP|1|S2|G|737
7QVP|1|S2|C|738
7QVP|1|S2|C|739
7QVP|1|S2|C|745
7QVP|1|S2|C|746
7QVP|1|S2|U|747
7QVP|1|S2|C|748
7QVP|1|S2|U|749
7QVP|1|S2|C|750
7QVP|1|S2|G|751
7QVP|1|S2|G|752
7QVP|1|S2|C|753
7QVP|1|S2|G|789
7QVP|1|S2|C|790
7QVP|1|S2|C|791
7QVP|1|S2|C|792
7QVP|1|S2|G|793
7QVP|1|S2|A|794
7QVP|1|S2|A|795
7QVP|1|S2|G|796
7QVP|1|S2|C|797
7QVP|1|S2|G|798
7QVP|1|S2|U|799
7QVP|1|S2|U|800
*
7QVP|1|S2|A|865
7QVP|1|S2|U|866
7QVP|1|S2|G|867
7QVP|1|S2|G|868
7QVP|1|S2|A|869
7QVP|1|S2|A|870
7QVP|1|S2|U|871
7QVP|1|S2|A|872
7QVP|1|S2|G|873
7QVP|1|S2|G|874
*
7QVP|1|S2|C|912
7QVP|1|S2|A|913
7QVP|1|S2|U|914
7QVP|1|S2|G|915
7QVP|1|S2|A|916
7QVP|1|S2|U|917
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: