J3_7QVP_049
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_049 not in the Motif Atlas
- Homologous match to J3_8C3A_035
- Geometric discrepancy: 0.2729
- The information below is about J3_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_00811.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|S3|A|816
7QVP|1|S3|G|817
7QVP|1|S3|A|818
7QVP|1|S3|G|819
*
7QVP|1|S3|C|829
7QVP|1|S3|A|830
7QVP|1|S3|G|831
*
7QVP|1|S3|C|843
7QVP|1|S3|U|844
7QVP|1|S3|G|845
7QVP|1|S3|G|846
7QVP|1|S3|A|847
7QVP|1|S3|U|848
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain RE
- 40S ribosomal protein S4, X isoform
- Chain RJ
- 40S ribosomal protein S9
- Chain RY
- 40S ribosomal protein S24
Coloring options: