J3_7QVP_061
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUCG*CGAUAGUCAACAAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7QVP|1|L1|C|23, 7QVP|1|L6|U|354, 7QVP|1|L6|A|362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_061 not in the Motif Atlas
- Geometric match to J3_5TBW_061
- Geometric discrepancy: 0.069
- The information below is about J3_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
7QVP|1|L1|C|21
7QVP|1|L1|U|22
7QVP|1|L1|C|23
7QVP|1|L1|G|24
*
7QVP|1|L6|C|351
7QVP|1|L6|G|352
7QVP|1|L6|A|353
7QVP|1|L6|U|354
7QVP|1|L6|A|355
7QVP|1|L6|G|356
7QVP|1|L6|U|357
7QVP|1|L6|C|358
7QVP|1|L6|A|359
7QVP|1|L6|A|360
7QVP|1|L6|C|361
7QVP|1|L6|A|362
7QVP|1|L6|A|363
7QVP|1|L6|G|364
7QVP|1|L6|U|365
7QVP|1|L6|A|366
7QVP|1|L6|C|367
*
7QVP|1|L6|G|374
7QVP|1|L6|G|375
7QVP|1|L6|A|376
7QVP|1|L6|A|377
7QVP|1|L6|A|378
7QVP|1|L6|G|379
Current chains
- Chain L1
- 5.8S ribosomal RNA
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain MC
- 60S ribosomal protein L4
- Chain MY
- KOW domain-containing protein
- Chain Mj
- Ribosomal protein L37
- Chain Ml
- 60S ribosomal protein L39
Coloring options: