J3_7QVP_073

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

7QVP|1|L6|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L6|C|196
7QVP|1|L6|A|197
7QVP|1|L6|A|198
7QVP|1|L6|G|199
*
7QVP|1|L6|C|215
7QVP|1|L6|C|216
7QVP|1|L6|C|217
7QVP|1|L6|A|218
7QVP|1|L6|G|219
7QVP|1|L6|C|220
7QVP|1|L6|C|221
7QVP|1|L6|C|222
7QVP|1|L6|G|223
7QVP|1|L6|U|224
7QVP|1|L6|G|225
7QVP|1|L6|G|226
7QVP|1|L6|A|227
7QVP|1|L6|C|228
*
7QVP|1|L6|G|240
7QVP|1|L6|G|241
7QVP|1|L6|U|242
7QVP|1|L6|A|243
7QVP|1|L6|G|244

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MC

60S ribosomal protein L4

Chain MY

KOW domain-containing protein