J3_7QVP_074

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

7QVP|1|L6|C|704, 7QVP|1|L6|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L6|C|451
7QVP|1|L6|A|452
7QVP|1|L6|G|453
7QVP|1|L6|U|454
7QVP|1|L6|C|455
*
7QVP|1|L6|G|701
7QVP|1|L6|U|702
7QVP|1|L6|G|703
7QVP|1|L6|C|704
7QVP|1|L6|G|705
*
7QVP|1|L6|C|1292
7QVP|1|L6|G|1293
7QVP|1|L6|A|1294
7QVP|1|L6|C|1295
7QVP|1|L6|G|1296

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain ME

60S ribosomal protein L6

Chain Me

60S ribosomal protein L32

Chain Mf

60S ribosomal protein L35a