J3_7QVP_080
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 7QVP|1|L9|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_080 not in the Motif Atlas
- Homologous match to J3_8C3A_059
- Geometric discrepancy: 0.0999
- The information below is about J3_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7QVP|1|L9|C|9
7QVP|1|L9|C|10
7QVP|1|L9|A|11
7QVP|1|L9|U|12
7QVP|1|L9|A|13
7QVP|1|L9|C|14
*
7QVP|1|L9|G|65
7QVP|1|L9|G|66
*
7QVP|1|L9|U|109
7QVP|1|L9|G|110
Current chains
- Chain L9
- 5S ribosomal RNA
Nearby chains
- Chain L6
- Large subunit ribosomal RNA; LSU rRNA
- Chain MD
- 60S ribosomal protein L5
- Chain MI
- 60S ribosomal protein L10-like
- Chain MT
- 60S ribosomal protein L21
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