J3_7R4X_012

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7R4X_012 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.0781

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7R4X|1|2|U|1350
7R4X|1|2|G|1351
*
7R4X|1|2|U|1360
7R4X|1|2|G|1361
7R4X|1|2|U|1362
7R4X|1|2|C|1363
*
7R4X|1|2|G|1375
7R4X|1|2|A|1376
7R4X|1|2|U|1377
7R4X|1|2|A|1378
7R4X|1|2|A|1379

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17