J3_7R4X_016

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

7R4X|1|2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7R4X_016 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0483

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7R4X|1|2|A|40
7R4X|1|2|G|41
7R4X|1|2|A|42
7R4X|1|2|U|43
7R4X|1|2|U|44
7R4X|1|2|A|45
7R4X|1|2|A|46
7R4X|1|2|G|47
*
7R4X|1|2|C|479
7R4X|1|2|G|480
7R4X|1|2|C|481
7R4X|1|2|G|482
7R4X|1|2|C|483
7R4X|1|2|A2M|484
7R4X|1|2|A|485
7R4X|1|2|A|486
7R4X|1|2|U|487
*
7R4X|1|2|A2M|512
7R4X|1|2|G|513
7R4X|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain Y

40S ribosomal protein S24