J3_7R4X_019
3D structure
- PDB id
- 7R4X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7R4X|1|2|G|1256, 7R4X|1|2|A|1258, 7R4X|1|2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7R4X_019 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.1399
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7R4X|1|2|C|1237
7R4X|1|2|PSU|1238
7R4X|1|2|U|1239
7R4X|1|2|A|1240
7R4X|1|2|A|1241
7R4X|1|2|U|1242
7R4X|1|2|U|1243
7R4X|1|2|PSU|1244
*
7R4X|1|2|G|1255
7R4X|1|2|G|1256
7R4X|1|2|G|1257
7R4X|1|2|A|1258
7R4X|1|2|A|1259
7R4X|1|2|A|1260
7R4X|1|2|C|1261
7R4X|1|2|C|1262
7R4X|1|2|U|1263
7R4X|1|2|C|1264
7R4X|1|2|A|1265
7R4X|1|2|C|1266
*
7R4X|1|2|G|1516
7R4X|1|2|G|1517
7R4X|1|2|C|1518
7R4X|1|2|U|1519
7R4X|1|2|G|1520
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain S
- 40S ribosomal protein S18
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
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