J3_7R7A_016
3D structure
- PDB id
- 7R7A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7R7A_016 not in the Motif Atlas
- Homologous match to J3_8C3A_055
- Geometric discrepancy: 0.2721
- The information below is about J3_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10980.1
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7R7A|1|1|A|1654
7R7A|1|1|G|1655
7R7A|1|1|A|1656
7R7A|1|1|C|1657
7R7A|1|1|G|1658
*
7R7A|1|1|C|1791
7R7A|1|1|C|1792
*
7R7A|1|1|G|1796
7R7A|1|1|A|1797
7R7A|1|1|A|1798
7R7A|1|1|A|1799
7R7A|1|1|A|1800
7R7A|1|1|U|1801
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain I
- Nucleolar complex-associated protein 3
- Chain g
- 60S ribosomal protein L34-A
- Chain n
- Pescadillo homolog
Coloring options: