J3_7RQ8_039

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7RQ8|1|2A|A|2518, 7RQ8|1|2A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ8_039 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0472

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7RQ8|1|2A|C|2517
7RQ8|1|2A|A|2518
7RQ8|1|2A|U|2519
7RQ8|1|2A|C|2520
*
7RQ8|1|2A|G|2545
7RQ8|1|2A|U|2546
7RQ8|1|2A|U|2547
*
7RQ8|1|2A|A|2561
7RQ8|1|2A|U|2562
7RQ8|1|2A|U|2563
7RQ8|1|2A|A|2564
7RQ8|1|2A|A|2565
7RQ8|1|2A|A|2566
7RQ8|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14