J3_7RQ8_054

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

7RQ8|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ8_054 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1008

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7RQ8|1|2a|C|1237
7RQ8|1|2a|A|1238
7RQ8|1|2a|A|1239
7RQ8|1|2a|U|1240
7RQ8|1|2a|G|1241
*
7RQ8|1|2a|C|1296
7RQ8|1|2a|C|1297
7RQ8|1|2a|C|1298
7RQ8|1|2a|A|1299
7RQ8|1|2a|G|1300
7RQ8|1|2a|U|1301
7RQ8|1|2a|U|1302
7RQ8|1|2a|C|1303
*
7RQ8|1|2a|G|1334
7RQ8|1|2a|C|1335
7RQ8|1|2a|C|1336
7RQ8|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx