J3_7RQ8_056

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7RQ8|1|1A|U|448, 7RQ8|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ8_056 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0591

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

7RQ8|1|1A|C|32
7RQ8|1|1A|U|33
7RQ8|1|1A|C|34
7RQ8|1|1A|G|35
*
7RQ8|1|1A|C|445
7RQ8|1|1A|G|446
7RQ8|1|1A|A|447
7RQ8|1|1A|U|448
7RQ8|1|1A|A|449
7RQ8|1|1A|G|450
7RQ8|1|1A|C|451
7RQ8|1|1A|G|452
7RQ8|1|1A|C|453
7RQ8|1|1A|A|454
7RQ8|1|1A|C|455
7RQ8|1|1A|C|456
7RQ8|1|1A|A|457
7RQ8|1|1A|G|458
7RQ8|1|1A|U|459
7RQ8|1|1A|A|460
7RQ8|1|1A|C|461
*
7RQ8|1|1A|G|468
7RQ8|1|1A|G|469
7RQ8|1|1A|A|470
7RQ8|1|1A|A|471
7RQ8|1|1A|A|472
7RQ8|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23