J3_7RQ8_077

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

7RQ8|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ8_077 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.1587

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7RQ8|1|2a|C|1116
7RQ8|1|2a|G|1117
7RQ8|1|2a|C|1118
*
7RQ8|1|2a|G|1155
7RQ8|1|2a|G|1156
7RQ8|1|2a|A|1157
7RQ8|1|2a|C|1158
7RQ8|1|2a|U|1159
7RQ8|1|2a|G|1160
7RQ8|1|2a|C|1161
*
7RQ8|1|2a|G|1175
7RQ8|1|2a|A|1176
7RQ8|1|2a|G|1177
7RQ8|1|2a|G|1178
7RQ8|1|2a|A|1179
7RQ8|1|2a|A|1180
7RQ8|1|2a|G|1181
7RQ8|1|2a|G|1182
7RQ8|1|2a|A|1183
7RQ8|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z