J3_7RQ9_045

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UG*CGCCGAUGG*CAG

Length

14 nucleotides

Bulged bases

7RQ9|1|2a|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ9_045 not in the Motif Atlas

Homologous match to J3_6CZR_017

Geometric discrepancy: 0.125

The information below is about J3_6CZR_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.3

Basepair signature

cWW-F-cWW-F-F-tWW-F-cWW-F

Number of instances in this motif group

5

Unit IDs

7RQ9|1|2a|U|672
7RQ9|1|2a|G|673
*
7RQ9|1|2a|C|717
7RQ9|1|2a|G|718
7RQ9|1|2a|C|719
7RQ9|1|2a|C|720
7RQ9|1|2a|G|721
7RQ9|1|2a|A|722
7RQ9|1|2a|U|723
7RQ9|1|2a|G|724
7RQ9|1|2a|G|725
*
7RQ9|1|2a|C|732
7RQ9|1|2a|A|733
7RQ9|1|2a|G|734

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18