J3_7RQ9_062
3D structure
- PDB id
- 7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 7RQ9|1|1a|C|48, 7RQ9|1|1a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7RQ9_062 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0769
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7RQ9|1|1a|G|46
7RQ9|1|1a|C|47
7RQ9|1|1a|C|48
7RQ9|1|1a|U|49
7RQ9|1|1a|A|50
7RQ9|1|1a|A|51
7RQ9|1|1a|G|52
*
7RQ9|1|1a|U|359
7RQ9|1|1a|A|360
7RQ9|1|1a|G|361
7RQ9|1|1a|G|362
7RQ9|1|1a|A|363
7RQ9|1|1a|A|364
7RQ9|1|1a|U|365
7RQ9|1|1a|C|366
7RQ9|1|1a|U|367
*
7RQ9|1|1a|A|393
7RQ9|1|1a|G|394
7RQ9|1|1a|C|395
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1p
- 30S ribosomal protein S16
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