J3_7RQ9_069

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ9_069 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0821

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7RQ9|1|2A|G|1424
7RQ9|1|2A|G|1425
7RQ9|1|2A|G|1426
7RQ9|1|2A|A|1427
7RQ9|1|2A|C|1428
7RQ9|1|2A|G|1429
*
7RQ9|1|2A|C|1564
7RQ9|1|2A|C|1565
*
7RQ9|1|2A|G|1568
7RQ9|1|2A|A|1569
7RQ9|1|2A|A|1570
7RQ9|1|2A|A|1571
7RQ9|1|2A|A|1572
7RQ9|1|2A|G|1573
7RQ9|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2