J3_7RQB_056

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

7RQB|1|1A|U|504, 7RQB|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQB_056 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0399

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7RQB|1|1A|G|30
7RQB|1|1A|C|31
*
7RQB|1|1A|G|474
7RQB|1|1A|U|475
7RQB|1|1A|G|476
7RQB|1|1A|A|477
7RQB|1|1A|A|478
7RQB|1|1A|A|479
7RQB|1|1A|A|480
7RQB|1|1A|G|481
7RQB|1|1A|A|482
7RQB|1|1A|A|483
7RQB|1|1A|C|484
*
7RQB|1|1A|G|496
7RQB|1|1A|A|497
7RQB|1|1A|G|498
7RQB|1|1A|U|499
7RQB|1|1A|G|500
7RQB|1|1A|A|501
7RQB|1|1A|A|502
7RQB|1|1A|A|503
7RQB|1|1A|U|504
7RQB|1|1A|A|505
7RQB|1|1A|G|506
7RQB|1|1A|A|507
7RQB|1|1A|G|508
7RQB|1|1A|C|509
7RQB|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24