J3_7RQB_057

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7RQB|1|1A|U|448, 7RQB|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQB_057 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0449

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7RQB|1|1A|C|32
7RQB|1|1A|U|33
7RQB|1|1A|C|34
7RQB|1|1A|G|35
*
7RQB|1|1A|C|445
7RQB|1|1A|G|446
7RQB|1|1A|A|447
7RQB|1|1A|U|448
7RQB|1|1A|A|449
7RQB|1|1A|G|450
7RQB|1|1A|C|451
7RQB|1|1A|G|452
7RQB|1|1A|C|453
7RQB|1|1A|A|454
7RQB|1|1A|C|455
7RQB|1|1A|C|456
7RQB|1|1A|A|457
7RQB|1|1A|G|458
7RQB|1|1A|U|459
7RQB|1|1A|A|460
7RQB|1|1A|C|461
*
7RQB|1|1A|G|468
7RQB|1|1A|G|469
7RQB|1|1A|A|470
7RQB|1|1A|A|471
7RQB|1|1A|A|472
7RQB|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23