J3_7RQB_060

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQB_060 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0578

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7RQB|1|1A|G|1424
7RQB|1|1A|G|1425
7RQB|1|1A|G|1426
7RQB|1|1A|A|1427
7RQB|1|1A|C|1428
7RQB|1|1A|G|1429
*
7RQB|1|1A|C|1564
7RQB|1|1A|C|1565
*
7RQB|1|1A|G|1568
7RQB|1|1A|A|1569
7RQB|1|1A|A|1570
7RQB|1|1A|A|1571
7RQB|1|1A|A|1572
7RQB|1|1A|G|1573
7RQB|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2