J3_7RQC_031

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

7RQC|1|2A|G|686, 7RQC|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQC_031 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0332

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7RQC|1|2A|C|683
7RQC|1|2A|G|684
7RQC|1|2A|A|685
7RQC|1|2A|G|686
7RQC|1|2A|C|687
7RQC|1|2A|U|688
7RQC|1|2A|A|689
*
7RQC|1|2A|U|773
7RQC|1|2A|A|774
7RQC|1|2A|G|775
*
7RQC|1|2A|C|791
7RQC|1|2A|G|792
7RQC|1|2A|A|793
7RQC|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2