J3_7RQC_038

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7RQC|1|2A|A|2518, 7RQC|1|2A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQC_038 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0473

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7RQC|1|2A|C|2517
7RQC|1|2A|A|2518
7RQC|1|2A|U|2519
7RQC|1|2A|C|2520
*
7RQC|1|2A|G|2545
7RQC|1|2A|U|2546
7RQC|1|2A|U|2547
*
7RQC|1|2A|A|2561
7RQC|1|2A|U|2562
7RQC|1|2A|U|2563
7RQC|1|2A|A|2564
7RQC|1|2A|A|2565
7RQC|1|2A|A|2566
7RQC|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14